miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cavia porcellus



ABOUT THIS RECORD

ID: MNEST009612
species: Cavia porcellus
miRNA family: miR-3195
source: miRNEST

Taxonomy by NCBI:
Cavia porcellus Cavia Caviidae Hystricognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGCGCCGGGTCCGGGTCTTCC

miRNA*
AAGACCCACTCCCCGGCGCCGCT

mismatches: 3
bulges: 2

View larger
pre-miRNA
GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAACAGGACC
CCGGCGCGCCGGGTCCGGGTCTTCCCGGAGT


dot-bracket secondary structure
.......(((((((((....((((((((.(((...(((((((((...(((.....)))...)))))..((.((...((((.....))))...)).)).))
)))))))))))))...)))))))))......



SIMILARITIES
miRBase mmu-mir-5105: 1e-19

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 3e-39
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;